Dataset: WormNeuroAtlas
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White_A White_L4 White_whole Varshney Bentley2016_MA Bentley2016_PEP Cook2019Herm Cook2019Male Cook2020 Brittin2021 Witvliet1 Witvliet2 Witvliet3 Witvliet4 Witvliet5 Witvliet6 Witvliet7 Witvliet8 WormNeuroAtlas Randi2023 RipollSanchezShortRange RipollSanchezMidRange RipollSanchezLongRange Yim2024 Wang2024Herm Wang2024Male OpenWormUnified Test SSData UpdSSData UpdSSData2 GleesonModel OlivaresModel
Dataset taken from Randi et al. 2023. Data from the WormNeuroAtlas package for neuronal connectivity. Python Reader: WormNeuroAtlasReader
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Raw Data Neurons Pharynx Social Network Escape Response Circuit Cook 2019 Fig 3 Locomotion 1 Locomotion 2 Locomotion 3 Peptidergic Hubs Nonpharyngeal Neurons (herm) Sensory Neurons (somatic) Motor Neurons (somatic) Interneurons (somatic)
A view of the data set with neurons grouped as in Figure 3 of Cook et al. 2019
Cook 2019 Fig 3 (Full1)
A view of the data set with neurons grouped as in Figure 3 of Cook et al. 2019
| Connection type | Total size | Values present | Nodes with pre connections | Nodes with post connections |
|---|---|---|---|---|
| Chemical Exc | (17, 17) matrix | 159 non-zero entries, avg. weight: 156.28301886792454, sum: 24849.0 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
| Chemical Inh | (17, 17) matrix | 38 non-zero entries, avg. weight: 59.63157894736842, sum: 2266.0 | HMN, IN2, IN3, MNVC | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6 |
| Electrical | (17, 17) matrix | 121 non-zero entries, avg. weight: 40.70247933884298, sum: 4925.0 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
| Acetylcholine | (17, 17) matrix | 131 non-zero entries, avg. weight: 85.43511450381679, sum: 11192.0 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN3, SN4, SN6, VC | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6, VC |
| GABA | (17, 17) matrix | 38 non-zero entries, avg. weight: 59.63157894736842, sum: 2266.0 | HMN, IN2, IN3, MNVC | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6 |
| Glutamate | (17, 17) matrix | 104 non-zero entries, avg. weight: 99.59615384615384, sum: 10358.0 | IN1, IN2, IN3, IN4, SN1, SN2, SN3, SN4, SN5, SN6 | HMN, HSN, IN1, IN2, IN3, IN4, MNVC, SMN, SN1, SN2, SN3, SN4, SN5, SN6 |